sirFAST is designed to map short reads generated with the Compelete Genomics (CG) platform to reference genome assemblies; in a fast and memory-efficient manner.
Currently Supported Features: Planned Features:

Download from Git Repository

git clone


2014-07-27: sirFAST version release


Please cite the following accompanying article if you would like to use or build upon the tools:

Donghyuk Lee, Farhad Hormozdiari, Hongyi Xin, Faraz Hach, Onur Mutlu, and Can Alkan,
"Fast and Accurate Mapping of Complete Genomics Reads" Methods, October 22, 2014. PDF
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